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Data

iVirus collects many viral
datasets useful to viral researchers

Here you'll find a list of datasets provided by iVirus - either through identifying valuable viral datasets in the literature, or generating the data within the Sullivan lab.

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VirSorter Dataset from Public Microbes

Sequences, cluster annotations, virus-host matrices, and predictions for the Virsorter curated data set
PublicationCyVerse

Viromics Benchmarking

Composition tables, simulated viromes, coverages, and abundance matrices for viromics benchmarking.
PublicationCyVerse

Pacific Ocean Virome (POV)

Reads, ORFs, assembly, clusters, metadata, and supporting code for the Pacific Ocean Virome.
PublicationCyVerse

Global Ocean Virome

AMGs, contigs, viral populations and their clusters, as well as putative hosts for the Global Ocean Virome.
PublicationCyVerse

Mesopelagic Archaeal Viruses (Vik 2017)

Reads, contigs, genes, abundances and supplemental data for Mesopelagic Ocean archaeal viruses.
PublicationCyVerse

Trubl Soil Viromes

Raw reads used to optimize the generation of viromes from soils.
PublicationCyVerse

Tibet Glacier Viromes (2017)

Raw reads, QC reads, and putative viruses of glacial viromes.
PublicationCyVerse

Tara Ocean Viromes (TOV 4)

Supporting information for metaproteomics of marine viruses.
PublicationCyVerse

Tara Oceans Viromes (TOV 43)

Contigs, proteins, protein clusters and relative abundances of viruses in the Tara Oceans.
PublicationCyVerse

Pseudoalteromonas Omics

Examining the virocell of Pseudoalteromonas with siphovirus PSA-HS2 and podovirus PSA-HP1.
PublicationCyVerse

Smoking and the Human Lung Virome

Raw reads and bioinformatic code used to explore the role of viruses in the human lung of smokers and nonsmokers
PublicationCyVerse

Phages p000v and p000y

Raw reads, assemblies, GenBank annotations, TEM images of phage p000v and p000y.
PublicationCyVerse

Global Ocean Virome 2 (GOV2)

Assemblies, viral populations (5-kb and 10-kb cutoffs) and normalized abundances of roughly 200K viral populations of the Global Ocean Virome, including Arctic regions.
PublicationCyVerse

Freshwater Virophage

Virophage contigs, their protein clusters, and their coverages in two North American freshwater lakes across a time series.
PublicationCyVerse

Towards Quantative Viromics

Contigs, reads, and mapping of mock communities to study quantitative viromics of ssDNA and dsDNA viruses.
PublicationCyVerse

Spinal cord Injury (Du et al.,2021)

Genome-resolved metagenomics and viromics of spinal cord injury gut dysbiosis, including raw reads, assemblies, viral contigs and MAGs.
PublicationCyVerse

Phage Infection Efficiency

Supplemental data for Howard-Varona et al., phage efficiencies in nearly identical hosts.
PublicationCyVerse

Infection Efficiency

Supplemental data for Howard-Varona et al, with transcriptomics of infection efficiency.
PublicationCyVerse

Barrow Viromes 2019

Raw reads, QC'd reads, and putative viral populations of Arctic Cryopeg Brine and Sea Ice. Update to 2018.
PublicationCyVerse

Barrow Viromes 2018

Raw reads, QC'd reads, assemblies, putative viral populations and hosts, as well as taxonomic information of Arctic Cryopeg Brine and Sea Ice.
PublicationCyVerse

Gut Virome Database (GVD)

Gut Virome Database (GVD) files, including the viral populations and individual virome database files.
PublicationCyVerse

Finding your data in CyVerse (DE 1.0)

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